STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106536806Histone deacetylase 6-like. (407 aa)    
Predicted Functional Partners:
arid4b
AT-rich interactive domain-containing protein 4B isoform X1.
    
 0.818
arid4a
AT-rich interactive domain-containing protein 4A.
    
 0.818
sin3b
Paired amphipathic helix protein Sin3b isoform X1.
   
 0.615
LOC106512997
Paired amphipathic helix protein Sin3a-like.
   
 0.615
LOC106533769
Paired amphipathic helix protein Sin3a-like isoform X1.
   
 0.615
LOC106520888
Histone-binding protein RBBP7 isoform X1.
   
 0.614
wdr73
WD repeat-containing protein 73.
   
 0.614
LOC106533987
Histone-binding protein RBBP4.
   
 0.614
leo1
RNA polymerase-associated protein LEO1.
    
 0.613
ranbp2
E3 SUMO-protein ligase RanBP2.
   
 0.605
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.