STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC35511.1Transcriptional regulator, AraC family with amidase-like domain. (321 aa)    
Predicted Functional Partners:
SKC35530.1
Hypothetical protein.
       0.571
SKC58629.1
Transcriptional regulator, AraC family.
  
   0.570
SKC36798.1
AraC-type DNA-binding protein.
  
   0.547
SKC35503.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
    0.492
SKC35496.1
Mycothiol system anti-sigma-R factor.
       0.490
SKC82581.1
AraC-type DNA-binding protein.
  
   0.455
SKC35535.1
DoxX protein.
       0.437
sigA
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.408
SKC67729.1
Transcriptional regulator, AraC family with amidase-like domain.
 
  
 
0.405
Your Current Organism:
Krasilnikoviella flava
NCBI taxonomy Id: 526729
Other names: CC 0387, CC0387, CCTCC AA208024, DSM 21481, JCM 16551, K. flava, Krasilnikoviella flava (Jiang et al. 2009) Nishijima et al. 2017, Promicromonospora flava, Promicromonospora flava Jiang et al. 2009, Promicromonospora sp. CC 0387
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