STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC36726.1RNA polymerase sigma-70 factor, ECF subfamily. (441 aa)    
Predicted Functional Partners:
SKC36732.1
Uncharacterized conserved protein.
 
     0.947
SKC36757.1
Uncharacterized conserved protein.
 
     0.947
SKC68473.1
Uncharacterized conserved protein.
 
     0.779
SKC51257.1
Uncharacterized conserved protein.
 
     0.776
SKC36976.1
Uncharacterized conserved protein.
     0.771
SKC51266.1
Uncharacterized conserved protein.
 
     0.771
SKC36761.1
Multiple sugar transport system permease protein.
       0.513
SKC36763.1
Multiple sugar transport system permease protein.
       0.513
SKC36767.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
       0.513
Your Current Organism:
Krasilnikoviella flava
NCBI taxonomy Id: 526729
Other names: CC 0387, CC0387, CCTCC AA208024, DSM 21481, JCM 16551, K. flava, Krasilnikoviella flava (Jiang et al. 2009) Nishijima et al. 2017, Promicromonospora flava, Promicromonospora flava Jiang et al. 2009, Promicromonospora sp. CC 0387
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