STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC46003.1Predicted dehydrogenase. (385 aa)    
Predicted Functional Partners:
SKC45958.1
Pectate lyase.
 
     0.812
SKC46013.1
Transcriptional regulator, LacI family.
     0.758
SKC45951.1
Predicted dehydrogenase.
  
     0.754
SKC46034.1
Multiple sugar transport system substrate-binding protein.
 
     0.753
SKC45577.1
Transcriptional regulator, LacI family.
 
     0.745
SKC45706.1
Sugar phosphate isomerase/epimerase.
 
 
  0.711
SKC72813.1
Predicted dehydrogenase.
  
     0.671
SKC46019.1
Multiple sugar transport system permease protein.
 
     0.669
SKC46026.1
Multiple sugar transport system permease protein.
 
     0.649
SKC45379.1
Predicted dehydrogenase.
  
     0.647
Your Current Organism:
Krasilnikoviella flava
NCBI taxonomy Id: 526729
Other names: CC 0387, CC0387, CCTCC AA208024, DSM 21481, JCM 16551, K. flava, Krasilnikoviella flava (Jiang et al. 2009) Nishijima et al. 2017, Promicromonospora flava, Promicromonospora flava Jiang et al. 2009, Promicromonospora sp. CC 0387
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.