STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC52181.1Helix-turn-helix domain-containing protein. (196 aa)    
Predicted Functional Partners:
SKC52190.1
Dienelactone hydrolase.
 
     0.771
SKC41428.1
Dipeptidase E; Belongs to the peptidase S51 family.
  
     0.584
SKC72389.1
Hypothetical protein.
  
     0.576
SKC52173.1
Alanine dehydrogenase.
       0.559
SKC71788.1
DoxX protein.
  
     0.527
SKC50866.1
Predicted kinase.
  
     0.519
SKC52144.1
Pentapeptide repeat-containing protein.
  
     0.509
SKC42212.1
Ribosomal protection tetracycline resistance protein.
  
     0.497
SKC62977.1
Glycosyl hydrolases family 43.
  
     0.463
SKC66570.1
Hyaluronate lyase.
  
     0.453
Your Current Organism:
Krasilnikoviella flava
NCBI taxonomy Id: 526729
Other names: CC 0387, CC0387, CCTCC AA208024, DSM 21481, JCM 16551, K. flava, Krasilnikoviella flava (Jiang et al. 2009) Nishijima et al. 2017, Promicromonospora flava, Promicromonospora flava Jiang et al. 2009, Promicromonospora sp. CC 0387
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.