STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC52429.1Putative peptidoglycan binding domain-containing protein. (716 aa)    
Predicted Functional Partners:
SKC52439.1
Hypothetical protein.
       0.773
SKC52447.1
Prephenate dehydratase.
       0.693
SKC52455.1
Prephenate dehydrogenase.
       0.693
SKC52411.1
N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase.
 
     0.559
SKC52402.1
GTP-binding protein.
       0.557
SKC52421.1
Hypothetical protein.
       0.498
SKC57770.1
YibE/F-like protein.
  
     0.488
SKC36293.1
Transcriptional attenuator, LytR family.
 
     0.426
SKC71586.1
ADP-ribose pyrophosphatase YjhB, NUDIX family.
  
     0.408
Your Current Organism:
Krasilnikoviella flava
NCBI taxonomy Id: 526729
Other names: CC 0387, CC0387, CCTCC AA208024, DSM 21481, JCM 16551, K. flava, Krasilnikoviella flava (Jiang et al. 2009) Nishijima et al. 2017, Promicromonospora flava, Promicromonospora flava Jiang et al. 2009, Promicromonospora sp. CC 0387
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