Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKC36805.1 | SKC65584.1 | SAMN04324258_0323 | SAMN04324258_2232 | Threonine dehydratase. | Acetolactate synthase, large subunit. | 0.977 |
SKC36805.1 | SKC65593.1 | SAMN04324258_0323 | SAMN04324258_2233 | Threonine dehydratase. | Acetolactate synthase, small subunit. | 0.985 |
SKC36805.1 | SKC71050.1 | SAMN04324258_0323 | SAMN04324258_2868 | Threonine dehydratase. | Threonine dehydratase. | 0.841 |
SKC36805.1 | SKC72466.1 | SAMN04324258_0323 | SAMN04324258_3166 | Threonine dehydratase. | Formate C-acetyltransferase. | 0.844 |
SKC36805.1 | ilvC | SAMN04324258_0323 | SAMN04324258_2234 | Threonine dehydratase. | Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.704 |
SKC36805.1 | ilvD-2 | SAMN04324258_0323 | SAMN04324258_2226 | Threonine dehydratase. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.666 |
SKC36805.1 | leuA | SAMN04324258_0323 | SAMN04324258_2557 | Threonine dehydratase. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.401 |
SKC36805.1 | leuB | SAMN04324258_0323 | SAMN04324258_2239 | Threonine dehydratase. | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 2 subfamily. | 0.946 |
SKC65584.1 | SKC36805.1 | SAMN04324258_2232 | SAMN04324258_0323 | Acetolactate synthase, large subunit. | Threonine dehydratase. | 0.977 |
SKC65584.1 | SKC65593.1 | SAMN04324258_2232 | SAMN04324258_2233 | Acetolactate synthase, large subunit. | Acetolactate synthase, small subunit. | 0.999 |
SKC65584.1 | SKC65667.1 | SAMN04324258_2232 | SAMN04324258_2243 | Acetolactate synthase, large subunit. | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 0.947 |
SKC65584.1 | SKC68810.1 | SAMN04324258_2232 | SAMN04324258_2621 | Acetolactate synthase, large subunit. | Pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.920 |
SKC65584.1 | SKC71050.1 | SAMN04324258_2232 | SAMN04324258_2868 | Acetolactate synthase, large subunit. | Threonine dehydratase. | 0.938 |
SKC65584.1 | SKC72466.1 | SAMN04324258_2232 | SAMN04324258_3166 | Acetolactate synthase, large subunit. | Formate C-acetyltransferase. | 0.923 |
SKC65584.1 | ilvC | SAMN04324258_2232 | SAMN04324258_2234 | Acetolactate synthase, large subunit. | Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.998 |
SKC65584.1 | ilvD-2 | SAMN04324258_2232 | SAMN04324258_2226 | Acetolactate synthase, large subunit. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.949 |
SKC65584.1 | leuA | SAMN04324258_2232 | SAMN04324258_2557 | Acetolactate synthase, large subunit. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. | 0.921 |
SKC65584.1 | leuB | SAMN04324258_2232 | SAMN04324258_2239 | Acetolactate synthase, large subunit. | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 2 subfamily. | 0.984 |
SKC65593.1 | SKC36805.1 | SAMN04324258_2233 | SAMN04324258_0323 | Acetolactate synthase, small subunit. | Threonine dehydratase. | 0.985 |
SKC65593.1 | SKC65584.1 | SAMN04324258_2233 | SAMN04324258_2232 | Acetolactate synthase, small subunit. | Acetolactate synthase, large subunit. | 0.999 |
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