STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC72729.1Predicted dehydrogenase. (309 aa)    
Predicted Functional Partners:
SKC72739.1
Hypothetical protein.
 
     0.878
SKC72752.1
Hypothetical protein.
 
    0.850
SKC72762.1
Peptide/nickel transport system substrate-binding protein.
 
     0.788
SKC72826.1
Dihydrodipicolinate synthase/N-acetylneuraminate lyase.
  
     0.712
SKC72823.1
Nucleoside-diphosphate-sugar epimerase.
  
    0.695
SKC56832.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.626
SKC75831.1
Hypothetical protein.
  
     0.606
SKC82500.1
Carbamoylphosphate synthase large subunit.
  
     0.598
SKC58428.1
Helix-turn-helix domain-containing protein.
  
     0.594
SKC66570.1
Hyaluronate lyase.
  
     0.557
Your Current Organism:
Krasilnikoviella flava
NCBI taxonomy Id: 526729
Other names: CC 0387, CC0387, CCTCC AA208024, DSM 21481, JCM 16551, K. flava, Krasilnikoviella flava (Jiang et al. 2009) Nishijima et al. 2017, Promicromonospora flava, Promicromonospora flava Jiang et al. 2009, Promicromonospora sp. CC 0387
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