STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC76756.1Endo-1,4-beta-xylanase, GH35 family. (413 aa)    
Predicted Functional Partners:
SKC76758.1
Predicted dehydrogenase.
       0.773
SKC76762.1
Hypothetical protein.
       0.773
SKC76768.1
Hypothetical protein.
 
  
  0.753
SKC42739.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.693
SKC76713.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-).
 
     0.676
SKC42735.1
Raffinose/stachyose/melibiose transport system permease protein.
 
     0.613
SKC42730.1
Raffinose/stachyose/melibiose transport system permease protein.
  
     0.584
SKC76703.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-).
       0.493
SKC76709.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-).
       0.493
SKC76773.1
Transcriptional regulator, LacI family.
       0.460
Your Current Organism:
Krasilnikoviella flava
NCBI taxonomy Id: 526729
Other names: CC 0387, CC0387, CCTCC AA208024, DSM 21481, JCM 16551, K. flava, Krasilnikoviella flava (Jiang et al. 2009) Nishijima et al. 2017, Promicromonospora flava, Promicromonospora flava Jiang et al. 2009, Promicromonospora sp. CC 0387
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