STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC82462.1Uncharacterized membrane protein HdeD, DUF308 family. (212 aa)    
Predicted Functional Partners:
SKC38217.1
Putative Mg2+ transporter-C (MgtC) family protein; Non-canonical start codon; manually curated.
 
  
 0.600
SKC82458.1
ABC-2 type transport system permease protein.
       0.555
SKC82460.1
ABC-2 type transport system ATP-binding protein.
       0.555
SKC57305.1
Heparinase II/III-like protein.
  
     0.526
SKC82463.1
Predicted transcriptional regulator, ArsR family.
       0.463
SKC82472.1
Fe-S cluster assembly protein SufB.
       0.463
SKC82473.1
Fe-S cluster assembly protein SufD.
       0.463
SKC82474.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
       0.463
Your Current Organism:
Krasilnikoviella flava
NCBI taxonomy Id: 526729
Other names: CC 0387, CC0387, CCTCC AA208024, DSM 21481, JCM 16551, K. flava, Krasilnikoviella flava (Jiang et al. 2009) Nishijima et al. 2017, Promicromonospora flava, Promicromonospora flava Jiang et al. 2009, Promicromonospora sp. CC 0387
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