STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACWI_00910Hypothetical protein. (136 aa)    
Predicted Functional Partners:
pduD
Propanediol dehydratase medium subunit.
 
  
 0.854
pduC
Propanediol dehydratase large subunit.
 
  
 0.810
pduE
Propanediol dehydratase small subunit.
 
  
 0.788
ddrA
Diol dehydratase-reactivating factor alpha subunit.
 
  
 0.743
nasF
uroporphyrinogen-III C-methyltransferase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
     
 0.698
ACWI_25600
Dehydratase medium subunit.
 
   
 0.676
pduB
Propanediol utilization protein PduB.
 
  
 0.658
ydaM_4
Putative diguanylate cyclase YdaM.
     
 0.631
sucD
Succinate-semialdehyde dehydrogenase (acetylating).
 
  
 0.621
pksJ
Polyketide synthase PksJ.
     
 0.575
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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