STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytrA_1HTH-type transcriptional repressor YtrA. (122 aa)    
Predicted Functional Partners:
ytrB_1
ABC transporter ATP-binding protein YtrB.
  
 0.988
ACWI_00950
Hypothetical protein.
       0.799
ACWI_17960
ABC-2 family transporter protein.
  
  
 0.661
skfE
SkfA peptide export ATP-binding protein SkfE.
  
 0.510
ytrA_2
HTH-type transcriptional repressor YtrA.
  
     0.466
ACWI_00920
Hypothetical protein.
       0.449
ACWI_09660
Hypothetical protein; SNF2 family N-terminal domain.
   
    0.424
ytrA_4
HTH-type transcriptional repressor YtrA.
  
     0.404
cobB_2
NAD-dependent protein deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
    0.401
ACWI_34660
Hypothetical protein.
  
    0.401
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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