STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACWI_01110DNA-binding transcriptional activator PspC. (103 aa)    
Predicted Functional Partners:
ACWI_18340
Phage shock protein A homolog.
  
 
 0.969
pspA_2
Phage shock protein A.
  
 
 0.969
barA_1
Signal transduction histidine-protein kinase BarA.
  
 
 0.931
barA_2
Signal transduction histidine-protein kinase BarA.
  
 
 0.929
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
   
 
 0.922
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
   
 
 0.922
ACWI_13780
Membrane protein of unknown function.
  
  
 0.828
ydaM_4
Putative diguanylate cyclase YdaM.
    
 
 0.808
tsaE
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE.
       0.787
desK
Sensor histidine kinase DesK.
  
  
 0.724
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.