Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yxdL_1ABC transporter ATP-binding protein YxdL. (255 aa)    
Predicted Functional Partners:
bceB
Bacitracin export permease protein BceB.
 
 0.999
graS
Sensor histidine kinase GraS.
 
 
 
 0.985
macB_5
Macrolide export ATP-binding/permease protein MacB.
 
 0.977
macB_2
Macrolide export ATP-binding/permease protein MacB.
 
 0.975
ytrF
ABC transporter permease YtrF precursor.
 
 0.975
smc_2
Chromosome partition protein Smc.
  
 
 0.935
ACWI_14480
Putative ABC transporter ATP-binding protein.
 
    
0.901
ddpD
Putative D,D-dipeptide transport ATP-binding protein DdpD; Belongs to the ABC transporter superfamily.
 
    
0.900
ACWI_15800
Putative ABC transporter ATP-binding protein.
 
    
0.899
ACWI_35120
Putative multidrug export ATP-binding/permease protein.
 
    
0.899
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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