Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACWI_02680ABC-2 family transporter protein. (241 aa)    
Predicted Functional Partners:
ACWI_02670
ABC-2 family transporter protein.
 
   
 0.964
yxlF_1
Putative ABC transporter ATP-binding protein YxlF.
 
  
 0.963
phoR_1
Alkaline phosphatase synthesis sensor protein PhoR.
 
   
 0.912
saeR
Response regulator SaeR.
 
     0.826
yxlF_2
Putative ABC transporter ATP-binding protein YxlF.
 
  
 0.619
ACWI_02700
Hypothetical protein.
       0.489
ACWI_02710
Bacterial transcription activator, effector binding domain.
       0.474
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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