STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxlF_1Putative ABC transporter ATP-binding protein YxlF. (237 aa)    
Predicted Functional Partners:
ACWI_02680
ABC-2 family transporter protein.
 
 
 0.976
ACWI_02670
ABC-2 family transporter protein.
 
 
 0.974
ACWI_24710
ABC-2 family transporter protein.
  
 0.895
lptB_1
Lipopolysaccharide export system ATP-binding protein LptB.
   
 
0.850
phoR_1
Alkaline phosphatase synthesis sensor protein PhoR.
 
   
 0.843
saeR
Response regulator SaeR.
 
  
 0.793
ACWI_12770
ABC-2 family transporter protein.
 
 
 0.727
livH_3
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
   
  0.721
atpD_2
ATP synthase subunit beta, sodium ion specific; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.650
macB_6
Macrolide export ATP-binding/permease protein MacB.
 
 
0.632
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.