Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACWI_03550Phage portal protein. (411 aa)    
Predicted Functional Partners:
ACWI_03570
Phage capsid family protein.
 
 
 
 0.969
ACWI_03520
Phage terminase, small subunit.
 
  
 0.963
ACWI_03530
Phage terminase.
 
   
 0.952
ACWI_03560
Caudovirus prohead protease.
 
   
 0.947
ACWI_33770
Phage capsid family protein.
 
 
 
 0.873
ACWI_31300
Phage capsid family protein.
 
 
 
 0.870
ACWI_03590
Phage head-tail joining protein.
  
 
 0.855
ACWI_31340
Phage terminase, small subunit.
 
  
 0.841
ACWI_33820
Phage terminase.
 
   
 0.804
ACWI_31330
Phage terminase.
 
   
 0.798
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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