STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mepM_1Murein DD-endopeptidase MepM. (1174 aa)    
Predicted Functional Partners:
ACWI_03640
Hypothetical protein.
       0.773
pbpF
Penicillin-binding protein 1F.
  
     0.716
ACWI_03670
Hypothetical protein.
  
  
 0.668
ACWI_03660
Phage tail protein.
  
    0.644
ACWI_03590
Phage head-tail joining protein.
     
 0.643
ACWI_03620
Hypothetical protein.
  
    0.626
ACWI_03570
Phage capsid family protein.
  
  
 0.605
ACWI_03630
Hypothetical protein.
       0.605
ACWI_03580
Phage gp6-like head-tail connector protein.
       0.589
ACWI_03600
Hypothetical protein.
       0.589
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.