STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lyxL-xylulose/3-keto-L-gulonate kinase; Belongs to the FGGY kinase family. (499 aa)    
Predicted Functional Partners:
fucA
L-fuculose phosphate aldolase.
 
 
 0.870
ACWI_02030
Fructoselysine 3-epimerase.
 
 
 0.808
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.771
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 
 0.741
gatD
Galactitol-1-phosphate 5-dehydrogenase.
 
 
 0.728
gutB
Sorbitol dehydrogenase.
 
 
 0.702
araB
Ribulokinase; Belongs to the FGGY kinase family.
 
 
0.664
fabG_1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
 0.635
fruA
PTS system fructose-specific EIIABC component.
     
 0.632
rpiB_1
Ribose-5-phosphate isomerase B.
    
 0.594
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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