STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ydaM_2Putative diguanylate cyclase YdaM. (241 aa)    
Predicted Functional Partners:
barA_1
Signal transduction histidine-protein kinase BarA.
  
 
 0.943
barA_2
Signal transduction histidine-protein kinase BarA.
  
 
 0.929
cph2_10
Phytochrome-like protein cph2.
 
 
 0.915
cph2_1
Phytochrome-like protein cph2.
 
 
 0.904
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 
 0.875
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 
 0.875
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.858
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.851
cph2_11
Phytochrome-like protein cph2.
 
 
 0.847
ydaM_4
Putative diguanylate cyclase YdaM.
 
 
0.845
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.