Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ydaM_3Putative diguanylate cyclase YdaM. (335 aa)    
Predicted Functional Partners:
prkC_1
Serine/threonine-protein kinase PrkC.
    
 0.901
yjcC
Putative membrane protein YjcC.
 
  
 0.843
cph2_10
Phytochrome-like protein cph2.
 
 
 0.837
cph2_1
Phytochrome-like protein cph2.
 
 0.822
cph2_11
Phytochrome-like protein cph2.
  
  
 0.817
cph2_9
Phytochrome-like protein cph2.
 
   0.801
cph2_5
Phytochrome-like protein cph2.
  
   0.778
cph2_6
Phytochrome-like protein cph2.
 
  
 0.761
rpfG_6
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
  
 0.745
rpfG_9
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
  
 0.716
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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