STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vdcA_1Diguanylate cyclase VdcA. (367 aa)    
Predicted Functional Partners:
cph2_3
Phytochrome-like protein cph2.
 0.926
barA_2
Signal transduction histidine-protein kinase BarA.
 
 0.912
cph2_10
Phytochrome-like protein cph2.
 0.895
cph2_1
Phytochrome-like protein cph2.
 0.885
rpfG_7
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 0.868
barA_1
Signal transduction histidine-protein kinase BarA.
 
 
 0.867
prkC_1
Serine/threonine-protein kinase PrkC.
   
 0.857
gmr_3
Cyclic di-GMP phosphodiesterase Gmr.
  
 
 0.837
cph2_5
Phytochrome-like protein cph2.
 0.809
yjcC
Putative membrane protein YjcC.
 
 
 0.803
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.