STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cgkAKappa-carrageenase precursor. (1617 aa)    
Predicted Functional Partners:
fliN
Flagellar motor switch protein FliN.
   
 
 0.929
ACWI_24910
Y_Y_Y domain protein.
 
0.806
ACWI_33640
Collagen triple helix repeat (20 copies).
 
 0.776
cinA_3
Putative competence-damage inducible protein; Belongs to the CinA family.
     
 0.762
ACWI_32900
Hypothetical protein.
   
   0.739
ACWI_09250
Hypothetical protein.
  
 0.738
inlA_2
internalin-A precursor.
  
 0.738
ACWI_23950
Hypothetical protein.
  
 0.738
ACWI_24110
Hypothetical protein.
  
 0.738
pksJ
Polyketide synthase PksJ.
  
  
 0.738
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.