STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioBBiotin synthase. (346 aa)    
Predicted Functional Partners:
mnmE_2
tRNA modification GTPase MnmE.
   
 0.991
ACWI_06140
Hypothetical protein.
 
  
 0.967
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
 
 0.927
hndD
NADP-reducing hydrogenase subunit HndC.
 
  
 0.875
thiH_1
2-iminoacetate synthase.
 
   
0.794
lysA
Diaminopimelate decarboxylase.
    
 0.763
ACWI_35610
Iron hydrogenase 1.
 
  
 0.732
ACWI_16260
Carboxynorspermidine synthase.
   
 
 0.728
thiH_2
2-iminoacetate synthase.
 
   
 0.722
bioY
Biotin transporter BioY.
  
  
 0.705
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.