Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACWI_07340Hypothetical protein. (120 aa)    
Predicted Functional Partners:
ahpF_2
NADH dehydrogenase.
    0.982
lhgO_1
L-2-hydroxyglutarate oxidase LhgO.
 
    0.958
ahpF_3
NADH dehydrogenase.
    0.922
ahpF_1
Alkyl hydroperoxide reductase subunit F.
    0.909
glpA
Anaerobic glycerol-3-phosphate dehydrogenase subunit A.
 
    0.826
lhgO_2
L-2-hydroxyglutarate oxidase LhgO.
 
    0.826
lhgO_3
L-2-hydroxyglutarate oxidase LhgO.
 
    0.826
ACWI_07310
Glycerol-3-phosphate responsive antiterminator.
 
    0.725
ACWI_07350
GDSL-like lipase/acylhydrolase.
       0.442
ACWI_07360
Hypothetical protein.
       0.429
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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