Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
patAPeptidoglycan O-acetyltransferase; Belongs to the membrane-bound acyltransferase family. (466 aa)    
Predicted Functional Partners:
pksJ
Polyketide synthase PksJ.
  
 
 0.982
ACWI_07380
Hypothetical protein.
     0.978
ACWI_07350
GDSL-like lipase/acylhydrolase.
 
     0.931
ACWI_07360
Hypothetical protein.
 
     0.929
lgrD
Linear gramicidin synthase subunit D; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.758
acpP_1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.755
acpP_2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.755
sucD
Succinate-semialdehyde dehydrogenase (acetylating).
    
   0.472
pbpX_1
Putative penicillin-binding protein PbpX.
  
  
 0.471
pbpE
Penicillin-binding protein 4; Belongs to the class-A beta-lactamase family.
  
  
 0.471
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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