xylB_1 protein (Acetobacterium wieringae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

xylB_1

Xylulose kinase; Belongs to the FGGY kinase family. (513 aa)

Predicted Functional Partners:

ccpA

0.617

pksJ

0.607

yvoA_1

0.603

fucA

0.552

ygbN

0.545

deoC1

0.538

ACWI_07540

0.526

gutB

0.520

rpe

0.519

gatD

0.494

Your Current Organism:

Acetobacterium wieringae

NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACWI_07540	ccpA	ACWI_07540	ACWI_12040	Transaldolase.	Catabolite control protein A.	0.481
ACWI_07540	gatD	ACWI_07540	ACWI_24740	Transaldolase.	Galactitol-1-phosphate 5-dehydrogenase.	0.573
ACWI_07540	gutB	ACWI_07540	ACWI_24010	Transaldolase.	Sorbitol dehydrogenase.	0.573
ACWI_07540	pksJ	ACWI_07540	ACWI_26840	Transaldolase.	Polyketide synthase PksJ.	0.526
ACWI_07540	rpe	ACWI_07540	ACWI_13130	Transaldolase.	Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	0.763
ACWI_07540	xylB_1	ACWI_07540	ACWI_07400	Transaldolase.	Xylulose kinase; Belongs to the FGGY kinase family.	0.526
ccpA	ACWI_07540	ACWI_12040	ACWI_07540	Catabolite control protein A.	Transaldolase.	0.481
ccpA	gatD	ACWI_12040	ACWI_24740	Catabolite control protein A.	Galactitol-1-phosphate 5-dehydrogenase.	0.574
ccpA	gutB	ACWI_12040	ACWI_24010	Catabolite control protein A.	Sorbitol dehydrogenase.	0.545
ccpA	pksJ	ACWI_12040	ACWI_26840	Catabolite control protein A.	Polyketide synthase PksJ.	0.851
ccpA	xylB_1	ACWI_12040	ACWI_07400	Catabolite control protein A.	Xylulose kinase; Belongs to the FGGY kinase family.	0.617
ccpA	yvoA_1	ACWI_12040	ACWI_07390	Catabolite control protein A.	HTH-type transcriptional repressor YvoA.	0.593
deoC1	xylB_1	ACWI_07410	ACWI_07400	Deoxyribose-phosphate aldolase 1; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.	Xylulose kinase; Belongs to the FGGY kinase family.	0.538
deoC1	yvoA_1	ACWI_07410	ACWI_07390	Deoxyribose-phosphate aldolase 1; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.	HTH-type transcriptional repressor YvoA.	0.417
fucA	pksJ	ACWI_35770	ACWI_26840	L-fuculose phosphate aldolase.	Polyketide synthase PksJ.	0.475
fucA	rpe	ACWI_35770	ACWI_13130	L-fuculose phosphate aldolase.	Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.	0.438
fucA	xylB_1	ACWI_35770	ACWI_07400	L-fuculose phosphate aldolase.	Xylulose kinase; Belongs to the FGGY kinase family.	0.552
gatD	ACWI_07540	ACWI_24740	ACWI_07540	Galactitol-1-phosphate 5-dehydrogenase.	Transaldolase.	0.573
gatD	ccpA	ACWI_24740	ACWI_12040	Galactitol-1-phosphate 5-dehydrogenase.	Catabolite control protein A.	0.574
gatD	pksJ	ACWI_24740	ACWI_26840	Galactitol-1-phosphate 5-dehydrogenase.	Polyketide synthase PksJ.	0.718