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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_1Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. (380 aa)    
Predicted Functional Partners:
xerD_7
Tyrosine recombinase XerD.
  
     0.774
ACWI_07720
Hypothetical protein.
       0.773
xerD_5
Tyrosine recombinase XerD.
  
     0.772
xerD_4
Tyrosine recombinase XerD.
  
     0.771
xerC_1
Tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
  
     0.724
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
  0.655
spoIIIE
DNA translocase SpoIIIE.
  
   
 0.616
hslV
ATP-dependent protease subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
  
  
 0.524
prs_2
Ribose-phosphate pyrophosphokinase.
   
    0.493
ACWI_16900
Prephenate dehydrogenase.
  
    0.481
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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