STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylB_2Xylulose kinase. (510 aa)    
Predicted Functional Partners:
ccpA
Catabolite control protein A.
 
 
 
 0.607
pksJ
Polyketide synthase PksJ.
   
 
 0.607
fucA
L-fuculose phosphate aldolase.
 
  
 0.605
hgdC
Activator of (R)-2-hydroxyglutaryl-CoA dehydratase.
       0.598
ACWI_02030
Fructoselysine 3-epimerase.
  
 
 0.576
ygbN
Inner membrane permease YgbN.
  
  
 0.545
ACWI_07540
Transaldolase.
  
 
 0.526
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
 
 0.519
fruA
PTS system fructose-specific EIIABC component.
     
 0.488
gutB
Sorbitol dehydrogenase.
 
  
 0.464
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.