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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
desVIdTDP-3-amino-3,4, 6-trideoxy-alpha-D-glucopyranose. (247 aa)    
Predicted Functional Partners:
pksJ
Polyketide synthase PksJ.
    
 0.922
rsfS
Ribosomal silencing factor RsfS; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
  
 0.855
ykuR
N-acetyldiaminopimelate deacetylase.
       0.756
ACWI_08400
Heptaprenyl diphosphate synthase component I.
    
  0.593
ACWI_06850
Hypothetical protein.
 
 0.578
ACWI_21480
Putative nicotinate-nucleotide adenylyltransferase.
  
    0.575
gcvT_1
Aminomethyltransferase.
    
 0.564
bioB
Biotin synthase.
  
 
 0.562
gshAB_1
Glutathione biosynthesis bifunctional protein GshAB; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; In the N-terminal section; belongs to the glutamate--cysteine ligase type 1 family. Type 2 subfamily.
  
 
 0.555
gshAB_2
Glutathione biosynthesis bifunctional protein GshAB.
  
 
 0.555
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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