Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
phoR_3Alkaline phosphatase synthesis sensor protein PhoR. (479 aa)    
Predicted Functional Partners:
prkC_1
Serine/threonine-protein kinase PrkC.
  
 
 0.945
srrA_1
Transcriptional regulatory protein SrrA.
 
 0.930
yycF_1
Transcriptional regulatory protein YycF.
 
 0.845
ypdA_1
Sensor histidine kinase YpdA.
 
    
 0.823
srrA_3
Transcriptional regulatory protein SrrA.
 
 0.822
walR_2
Transcriptional regulatory protein WalR.
 
 0.817
cheR2_2
Chemotaxis protein methyltransferase cher2.
    
 0.800
yycF_2
Transcriptional regulatory protein YycF.
 
 0.798
phoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 0.777
srrA_2
Transcriptional regulatory protein SrrA.
 
 0.752
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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