gltB_2 protein (Acetobacterium wieringae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gltB_2

Glutamate synthase [NADPH] small chain. (491 aa)

Predicted Functional Partners:

gltB_1

0.999

hndC_1

0.991

hndC_2

0.989

glnA_1

0.950

gdhA

0.941

glmS

0.921

carB

0.913

glnA_2

0.911

ACWI_09270

0.909

purF

0.909

Your Current Organism:

Acetobacterium wieringae

NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACWI_09270	gdhA	ACWI_09270	ACWI_02550	2-oxoglutaramate amidase.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.940
ACWI_09270	gltB_1	ACWI_09270	ACWI_09090	2-oxoglutaramate amidase.	Ferredoxin-dependent glutamate synthase 1.	0.937
ACWI_09270	gltB_2	ACWI_09270	ACWI_09100	2-oxoglutaramate amidase.	Glutamate synthase [NADPH] small chain.	0.909
carB	glmS	ACWI_23760	ACWI_04020	Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.	Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	0.944
carB	glnA_1	ACWI_23760	ACWI_23840	Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.	Glutamine synthetase.	0.960
carB	glnA_2	ACWI_23760	ACWI_23860	Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.	Glutamine synthetase.	0.905
carB	gltB_1	ACWI_23760	ACWI_09090	Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.	Ferredoxin-dependent glutamate synthase 1.	0.979
carB	gltB_2	ACWI_23760	ACWI_09100	Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.	Glutamate synthase [NADPH] small chain.	0.913
carB	purF	ACWI_23760	ACWI_28180	Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.	Amidophosphoribosyltransferase precursor; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.	0.984
gdhA	ACWI_09270	ACWI_02550	ACWI_09270	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	2-oxoglutaramate amidase.	0.940
gdhA	glnA_1	ACWI_02550	ACWI_23840	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamine synthetase.	0.942
gdhA	glnA_2	ACWI_02550	ACWI_23860	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamine synthetase.	0.920
gdhA	gltB_1	ACWI_02550	ACWI_09090	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Ferredoxin-dependent glutamate synthase 1.	0.993
gdhA	gltB_2	ACWI_02550	ACWI_09100	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate synthase [NADPH] small chain.	0.941
gdhA	hndC_1	ACWI_02550	ACWI_06960	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	NADP-reducing hydrogenase subunit HndC.	0.533
gdhA	hndC_2	ACWI_02550	ACWI_24300	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	NADP-reducing hydrogenase subunit HndC.	0.533
glmS	carB	ACWI_04020	ACWI_23760	Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.	0.944
glmS	glnA_1	ACWI_04020	ACWI_23840	Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	Glutamine synthetase.	0.956
glmS	glnA_2	ACWI_04020	ACWI_23860	Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	Glutamine synthetase.	0.905
glmS	gltB_1	ACWI_04020	ACWI_09090	Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	Ferredoxin-dependent glutamate synthase 1.	0.971