STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgdApeptidoglycan-N-acetylglucosamine deacetylase. (308 aa)    
Predicted Functional Partners:
pksJ
Polyketide synthase PksJ.
  
  
 0.728
ACWI_22220
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
  
 0.550
cinA_3
Putative competence-damage inducible protein; Belongs to the CinA family.
     
 0.530
sulD
Bifunctional folate synthesis protein; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
       0.479
ywqD_2
Tyrosine-protein kinase YwqD.
     
 0.472
ACWI_25420
Bacterial Ig-like domain (group 2).
  
  
 0.471
ACWI_09200
Putative transporter YfdV.
  
    0.461
fmt_1
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.441
fmt_2
methionyl-tRNA formyltransferase.
  
  
 0.441
barA_1
Signal transduction histidine-protein kinase BarA.
     
 0.437
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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