STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vraRResponse regulator protein VraR. (207 aa)    
Predicted Functional Partners:
desK
Sensor histidine kinase DesK.
 
 
 0.983
barA_1
Signal transduction histidine-protein kinase BarA.
  
 
 0.961
barA_2
Signal transduction histidine-protein kinase BarA.
  
 
 0.942
ACWI_09370
ABC-2 family transporter protein.
 
   
 0.846
ACWI_09360
ABC-2 family transporter protein.
 
   
 0.839
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 
 0.836
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 
 0.836
drrA_1
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
  
 0.834
ydaM_4
Putative diguanylate cyclase YdaM.
   
 
 0.809
prkC_1
Serine/threonine-protein kinase PrkC.
  
 
 0.764
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.