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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mngR_1mannosyl-D-glycerate transport/metabolism system repressor MngR. (234 aa)    
Predicted Functional Partners:
metH_9
Methionine synthase.
       0.737
ACWI_20360
Hypothetical protein.
  
     0.662
hemE_2
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.655
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
 0.634
sinR
HTH-type transcriptional regulator SinR.
 
  
 0.611
puuR
HTH-type transcriptional regulator PuuR.
 
  
 0.595
ACWI_16100
Hypothetical protein.
  
     0.590
ACWI_34480
Amidohydrolase family protein.
 
 
 0.587
ACWI_34940
Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
  
     0.560
lutR_2
HTH-type transcriptional regulator LutR.
  
  
0.549
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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