STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metH_11Methionine synthase. (216 aa)    
Predicted Functional Partners:
yvoA_2
HTH-type transcriptional repressor YvoA.
       0.700
metH_10
Methionine synthase.
 
  
 
0.690
metH_3
Methionine synthase.
 
 
0.681
metH_6
Methionine synthase.
  
  
 
0.668
deoC1
Deoxyribose-phosphate aldolase 1; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
   
  0.643
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
   
  0.643
ACWI_11070
Hypothetical protein.
       0.642
acsE_6
5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase.
 
 
  0.636
hemE_4
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
   
 
  0.610
hemE_5
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
   
 
  0.610
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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