Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sufCVegetative protein 296. (242 aa)    
Predicted Functional Partners:
sufB
FeS cluster assembly protein SufB.
 
 
 0.999
csd
Putative cysteine desulfurase.
 
  
 0.957
iscU_1
Iron-sulfur cluster assembly scaffold protein IscU.
  
  
 0.760
iscU_2
Iron-sulfur cluster assembly scaffold protein IscU.
  
  
 0.760
ACWI_31780
Dinitrogenase iron-molybdenum cofactor.
  
  
 0.760
ACWI_21190
Hypothetical protein.
  
 
 0.759
ACWI_02120
Hypothetical protein.
  
  
 0.732
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.522
ccpA
Catabolite control protein A.
    
   0.458
ACWI_12190
Hypothetical protein.
     
 0.446
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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