Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ywqE_2Tyrosine-protein phosphatase YwqE. (268 aa)    
Predicted Functional Partners:
cap8A_1
Capsular polysaccharide type 8 biosynthesis protein cap8A.
 
 
 0.965
cap8A_2
Capsular polysaccharide type 8 biosynthesis protein cap8A.
 
 
 0.935
ywqD_2
Tyrosine-protein kinase YwqD.
  
 0.935
ywqD_1
Tyrosine-protein kinase YwqD.
  
 0.921
pglF_2
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
  
  
 0.773
wcaJ_1
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.756
rsbT
Serine/threonine-protein kinase RsbT.
    
   0.618
ACWI_12440
Transposase DDE domain protein.
       0.482
ACWI_31850
Antiporter inner membrane protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
  
 0.429
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.426
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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