Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppDOligopeptide transport ATP-binding protein OppD. (260 aa)    
Predicted Functional Partners:
gsiD_2
Glutathione transport system permease protein GsiD.
 0.999
dppC
Dipeptide transport system permease protein DppC.
 0.999
nikB_2
Nickel transport system permease protein NikB.
 0.998
gsiD_1
Glutathione transport system permease protein GsiD.
 
 0.995
oppF_2
Oligopeptide transport ATP-binding protein OppF.
 
0.995
gsiC
Glutathione transport system permease protein GsiC.
 0.994
appA
Oligopeptide-binding protein AppA precursor.
 
 0.978
nikE
Nickel import ATP-binding protein NikE.
 
 
0.954
nikB_1
Nickel transport system permease protein NikB.
 
 0.949
oppF_1
Oligopeptide transport ATP-binding protein OppF.
 
  
0.949
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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