Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubiE_2Demethylmenaquinone methyltransferase. (252 aa)    
Predicted Functional Partners:
doeB
N-alpha-acetyl-L-2,4-diaminobutyric acid deacetylase.
     0.953
pksJ
Polyketide synthase PksJ.
 
   
 0.686
ACWI_02730
Cobalamin biosynthesis protein CobT VWA domain protein.
  
     0.668
ACWI_14180
Cobalamin biosynthesis protein CobT VWA domain protein.
  
     0.648
ACWI_11780
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.633
gsiD_2
Glutathione transport system permease protein GsiD.
 
    0.600
ACWI_02540
Hypothetical protein.
  
     0.587
ACWI_02740
AAA domain (dynein-related subfamily).
  
     0.576
ACWI_14120
AAA domain (dynein-related subfamily).
  
     0.575
cynR_2
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
 
   
 0.523
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.