Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACWI_13340Hypothetical protein. (210 aa)    
Predicted Functional Partners:
ykuT
Putative MscS family protein YkuT.
 
     0.803
ACWI_13330
Hypothetical protein.
 
     0.799
ACWI_13300
Hypothetical protein.
       0.762
ACWI_13310
Colicin V production protein.
       0.762
soj_2
Sporulation initiation inhibitor protein Soj.
       0.619
spo0C_1
Chromosome-partitioning protein Spo0J; Belongs to the ParB family.
       0.619
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.510
ssbA_2
Single-stranded DNA-binding protein A; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
    0.497
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.468
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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