Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACWI_13690Fluoroquinolones export ATP-binding proteinc. (238 aa)    
Predicted Functional Partners:
ACWI_13700
ABC-2 type transporter.
 
  
 0.950
livF_2
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
    
0.896
ACWI_13680
Transcriptional regulator PadR-like family protein.
 
    0.819
livF_1
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
    
0.808
cysA_2
Sulfate/thiosulfate import ATP-binding protein CysA.
 
    
0.801
ACWI_24710
ABC-2 family transporter protein.
  
 
 0.726
ACWI_24700
ABC-2 family transporter protein.
  
 
 0.647
ACWI_28440
ABC-2 family transporter protein.
  
 
 0.647
livH_3
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
      0.613
ftsH_2
ATP-dependent zinc metalloprotease FtsH; Belongs to the AAA ATPase family.
  
 
 0.556
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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