Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
exuT_1Hexuronate transporter. (422 aa)    
Predicted Functional Partners:
ald
Alanine dehydrogenase.
       0.773
ACWI_14160
Hypothetical protein.
       0.773
ACWI_14130
Vitamin B12 dependent methionine synthase, activation domain.
       0.741
cypM
Cypemycin methyltransferase.
       0.714
pksJ
Polyketide synthase PksJ.
  
  
 0.693
ACWI_06040
Hypothetical protein.
  
     0.669
ttgR
HTH-type transcriptional regulator TtgR.
  
   
 0.647
ACWI_25300
Hypothetical protein.
  
     0.612
yqcE
Inner membrane protein YqcE.
  
     0.602
ACWI_14120
AAA domain (dynein-related subfamily).
       0.580
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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