STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycdT_1Putative diguanylate cyclase YcdT. (527 aa)    
Predicted Functional Partners:
cph2_10
Phytochrome-like protein cph2.
 
 
 0.842
yjcC
Putative membrane protein YjcC.
  
  
 0.788
cph2_5
Phytochrome-like protein cph2.
  
   0.786
cph2_9
Phytochrome-like protein cph2.
  
   0.776
cph2_6
Phytochrome-like protein cph2.
  
  
 0.763
rpfG_16
Cyclic di-GMP phosphodiesterase response regulator RpfG.
  
 
 
 0.730
rpfG_12
Cyclic di-GMP phosphodiesterase response regulator RpfG.
  
 
 
 0.718
yegE_3
Putative diguanylate cyclase YegE.
 
 
 0.680
rpfG_15
Cyclic di-GMP phosphodiesterase response regulator RpfG.
  
 
 
 0.654
yliE
Putative cyclic di-GMP phosphodiesterase YliE.
 
  
 0.610
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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