Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACWI_14790Chloramphenicol acetyltransferase. (220 aa)    
Predicted Functional Partners:
ACWI_14780
Hypothetical protein.
 
    0.893
dfx_1
Desulfoferrodoxin.
       0.684
ACWI_12190
Hypothetical protein.
  
     0.504
ACWI_05010
Transcriptional regulator PadR-like family protein.
  
     0.497
ACWI_12200
Hypothetical protein.
  
     0.495
ACWI_12220
Cellulose synthase regulator protein.
  
     0.467
ACWI_30800
Transcriptional regulator PadR-like family protein.
  
     0.440
icaA
poly-beta-1,6-N-acetyl-D-glucosamine synthase.
  
     0.437
rocR_1
Arginine utilization regulatory protein RocR.
   
    0.422
nifA
Nif-specific regulatory protein.
   
    0.422
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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