STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimO_1Ribosomal protein S12 methylthiotransferase RimO. (1196 aa)    
Predicted Functional Partners:
ACWI_14900
B12 binding domain protein.
 
    
0.781
ACWI_35190
B12 binding domain protein.
  
     0.760
ACWI_14910
Hypothetical protein.
       0.646
vnfA_2
Nitrogen fixation protein VnfA.
  
  
 0.645
ACWI_21840
V4R domain protein.
  
  
 0.633
pat
Phosphinothricin N-acetyltransferase.
       0.496
pksJ
Polyketide synthase PksJ.
 
    0.480
ACWI_14930
Coproporphyrinogen III oxidase.
 
    
0.412
ACWI_14940
Radical SAM superfamily protein.
 
    
0.410
tmk
Thymidylate kinase.
   
    0.409
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.