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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mcbRHTH-type transcriptional regulator McbR. (218 aa)    
Predicted Functional Partners:
prmC_1
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
   
   0.600
ilvH
Acetolactate synthase small subunit.
   
    0.542
tsaM1
Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1.
     
 0.536
sucD
Succinate-semialdehyde dehydrogenase (acetylating).
  
 
 0.534
lutR_2
HTH-type transcriptional regulator LutR.
 
  
0.453
pucD
Putative xanthine dehydrogenase subunit D.
  
    0.452
yvoA_1
HTH-type transcriptional repressor YvoA.
  
   
 0.449
ndhF
Nicotinate dehydrogenase FAD-subunit.
       0.437
ndhS
Nicotinate dehydrogenase small FeS subunit.
       0.437
cuyA
L-cysteate sulfo-lyase.
       0.430
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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