STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaM_6Putative diguanylate cyclase YdaM. (487 aa)    
Predicted Functional Partners:
cph2_3
Phytochrome-like protein cph2.
 
 0.921
barA_2
Signal transduction histidine-protein kinase BarA.
 
 0.912
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.887
cph2_1
Phytochrome-like protein cph2.
 
 0.883
barA_1
Signal transduction histidine-protein kinase BarA.
 
 
 0.868
adrA_2
Putative diguanylate cyclase AdrA.
 
  
  0.835
cph2_11
Phytochrome-like protein cph2.
  
 
 0.825
yliE
Putative cyclic di-GMP phosphodiesterase YliE.
 
 
 0.808
rpfG_15
Cyclic di-GMP phosphodiesterase response regulator RpfG.
  
 
 0.808
ydaM_4
Putative diguanylate cyclase YdaM.
 
0.802
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.