Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
slyA_1Transcriptional regulator SlyA. (154 aa)    
Predicted Functional Partners:
ACWI_15700
FMN-binding domain protein.
 
     0.772
ACWI_23690
Putative major pilin subunit.
  
     0.601
ACWI_23700
Hypothetical protein; Prokaryotic N-terminal methylation motif.
  
     0.502
ACWI_15720
Pyridoxal phosphate (PLP) phosphatase.
       0.485
ACWI_15730
Hypothetical protein.
       0.485
pksJ
Polyketide synthase PksJ.
  
  
 0.467
ACWI_04400
Double zinc ribbon.
  
     0.459
ACWI_02200
Flavodoxin.
  
     0.456
ACWI_14870
Glyoxalase-like domain protein.
  
   
 0.448
cdr_4
Coenzyme A disulfide reductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.428
Your Current Organism:
Acetobacterium wieringae
NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C
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