trkA_3 protein (Acetobacterium wieringae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

trkA_3

Trk system potassium uptake protein TrkA. (216 aa)

Predicted Functional Partners:

trkG_1

0.959

trkG_2

0.922

trkA_4

0.834

ktrB

0.667

rsmB

0.634

nasF

0.562

ACWI_04760

0.557

ACWI_16490

0.499

ACWI_16540

0.488

rsmF

0.425

Your Current Organism:

Acetobacterium wieringae

NCBI taxonomy Id: 52694
Other names: A. wieringae, ATCC 43740, JCM 2380, LMG 7579, LMG:7579, strain C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACWI_04760	nasF	ACWI_04760	ACWI_01770	MoaE protein.	uroporphyrinogen-III C-methyltransferase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.	0.677
ACWI_04760	trkA_3	ACWI_04760	ACWI_16520	MoaE protein.	Trk system potassium uptake protein TrkA.	0.557
ACWI_04760	trkA_4	ACWI_04760	ACWI_16530	MoaE protein.	Trk system potassium uptake protein TrkA.	0.557
ACWI_16490	trkA_3	ACWI_16490	ACWI_16520	Hypothetical protein.	Trk system potassium uptake protein TrkA.	0.499
ACWI_16490	trkA_4	ACWI_16490	ACWI_16530	Hypothetical protein.	Trk system potassium uptake protein TrkA.	0.499
ACWI_16490	trkG_1	ACWI_16490	ACWI_16500	Hypothetical protein.	Trk system potassium uptake protein TrkG.	0.794
ACWI_16540	trkA_3	ACWI_16540	ACWI_16520	Iron-sulfur flavoprotein.	Trk system potassium uptake protein TrkA.	0.488
ACWI_16540	trkA_4	ACWI_16540	ACWI_16530	Iron-sulfur flavoprotein.	Trk system potassium uptake protein TrkA.	0.488
ktrB	trkA_3	ACWI_21370	ACWI_16520	Ktr system potassium uptake protein B.	Trk system potassium uptake protein TrkA.	0.667
ktrB	trkA_4	ACWI_21370	ACWI_16530	Ktr system potassium uptake protein B.	Trk system potassium uptake protein TrkA.	0.667
nasF	ACWI_04760	ACWI_01770	ACWI_04760	uroporphyrinogen-III C-methyltransferase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.	MoaE protein.	0.677
nasF	trkA_3	ACWI_01770	ACWI_16520	uroporphyrinogen-III C-methyltransferase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.	Trk system potassium uptake protein TrkA.	0.562
nasF	trkA_4	ACWI_01770	ACWI_16530	uroporphyrinogen-III C-methyltransferase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.	Trk system potassium uptake protein TrkA.	0.562
rsmB	rsmF	ACWI_19130	ACWI_02960	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	Ribosomal RNA small subunit methyltransferase F.	0.586
rsmB	trkA_3	ACWI_19130	ACWI_16520	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	Trk system potassium uptake protein TrkA.	0.634
rsmB	trkA_4	ACWI_19130	ACWI_16530	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	Trk system potassium uptake protein TrkA.	0.634
rsmF	rsmB	ACWI_02960	ACWI_19130	Ribosomal RNA small subunit methyltransferase F.	Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.	0.586
rsmF	trkA_3	ACWI_02960	ACWI_16520	Ribosomal RNA small subunit methyltransferase F.	Trk system potassium uptake protein TrkA.	0.425
rsmF	trkA_4	ACWI_02960	ACWI_16530	Ribosomal RNA small subunit methyltransferase F.	Trk system potassium uptake protein TrkA.	0.425
trkA_3	ACWI_04760	ACWI_16520	ACWI_04760	Trk system potassium uptake protein TrkA.	MoaE protein.	0.557